PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.010G006800.1
Common NameB456_010G006800, LOC105774344
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family SRS
Protein Properties Length: 306aa    MW: 33726.5 Da    PI: 8.1359
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.010G006800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702225.78.9e-70842402154
              DUF702   2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel....kskkqsalss 88 
                         r+g+++CqdCGnqakkdC h RCRtCCksrgf+C+thvkstWvpaakrrerqqqla+++++++   + + +kr++e+      ++  +l++
  Gorai.010G006800.1  84 RQGGINCQDCGNQAKKDCLHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLATLQEQQQF--RGEIPKRQKENqgggVVTAVPSLAC 172
                         67999***************************************************99777655..5666666666645666777788888 PP

              DUF702  89 tklssaesk..keletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                         t+ls +++   + le  ++P+evss+avfrcv+vs++dd +ee+aYqtav+i+GhvfkGiLydqG+e+
  Gorai.010G006800.1 173 TRLSPTTTAttSGLELGQFPPEVSSQAVFRCVKVSAMDDVDEEFAYQTAVNIAGHVFKGILYDQGPES 240
                         888766554015567778************************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051424.2E-6587239IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016232.6E-2789131IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016243.5E-26190238IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MAGFFYLTGN KQEDKEESLH LYRNEEIYNS NNRGFEIWPQ YYYQQPQQAN VVSSSTYPFG  60
TGPSRRTIAG GFNLSDESSS SRLRQGGINC QDCGNQAKKD CLHLRCRTCC KSRGFQCQTH  120
VKSTWVPAAK RRERQQQLAT LQEQQQFRGE IPKRQKENQG GGVVTAVPSL ACTRLSPTTT  180
ATTSGLELGQ FPPEVSSQAV FRCVKVSAMD DVDEEFAYQT AVNIAGHVFK GILYDQGPES  240
RYTGGGGGSR ENSQQQQQLN LMADMTTTAV ATSSNIGTNM LDPSVYPAPI NAFIAGTQFF  300
PHPRS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5838951e-127JX583895.1 Gossypium hirsutum clone NBRI_GE17047 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012452264.10.0PREDICTED: protein SHI RELATED SEQUENCE 7-like
SwissprotQ9LQZ52e-86SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBLA0A0D2SKH40.0A0A0D2SKH4_G
STRINGPOPTR_0002s03000.11e-104(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26452572
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75520.14e-75SHI-related sequence 5
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]